2C6B Ligase date Nov 08, 2005
title Solution Structure Of The C4 Zinc-Finger Domain Of Hdm2
authors G.W.Yu, M.D.Allen, A.Andreeva, A.R.Fersht, M.Bycroft
compound source
Molecule: Ubiquitin-Protein Ligase E3 Mdm2
Chain: A
Synonym: Human Mdm2, P53-Binding Protein Mdm2, Oncoprotein Double Minute 2 Protein, Hdm2;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41
Expression_system_vector: Modified Prseta
methodSolution NMR
ligand ZN enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the C4 zinc finger domain of HDM2., Yu GW, Allen MD, Andreeva A, Fersht AR, Bycroft M, Protein Sci. 2006 Feb;15(2):384-9. Epub 2005 Dec 29. PMID:16385008
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk]
  • Biological Unit Coordinates (2c6b.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 2C6B
  • CSU: Contacts of Structural Units for 2C6B
  • Original NMR restraints for 2C6B from PDB
  • Retrieve 2C6B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C6B from S2C, [Save to disk]
  • View 2C6B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C6B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C6B, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c6b_A] [2c6b]
  • SWISS-PROT database: [Q00987]
  • Domain organization of [MDM2_HUMAN] by SWISSPFAM
  • Other resources with information on 2C6B
  • Community annotation for 2C6B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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