2C6K Transferase date Nov 10, 2005
title Crystal Structure Of The Human Cdk2 Complexed With The Triazolopyrimidine Inhibitor
authors C.M.Richardson, P.Dokurno, J.B.Murray, A.E.Surgenor
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: P33 Protein Kinase
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.183 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.550 71.633 72.262 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand DT2 enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTriazolo[1,5-a]pyrimidines as novel CDK2 inhibitors: protein structure-guided design and SAR., Richardson CM, Williamson DS, Parratt MJ, Borgognoni J, Cansfield AD, Dokurno P, Francis GL, Howes R, Moore JD, Murray JB, Robertson A, Surgenor AE, Torrance CJ, Bioorg Med Chem Lett. 2006 Mar 1;16(5):1353-7. Epub 2005 Dec 1. PMID:16325401
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (2c6k.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 2C6K
  • CSU: Contacts of Structural Units for 2C6K
  • Likely Quarternary Molecular Structure file(s) for 2C6K
  • Structure Factors (162 Kb)
  • Retrieve 2C6K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C6K from S2C, [Save to disk]
  • Re-refined 2c6k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2C6K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C6K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C6K, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c6k_A] [2c6k]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 2C6K: [S_TKc ] by SMART
  • Other resources with information on 2C6K
  • Community annotation for 2C6K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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