2C8O Hydrolase date Dec 06, 2005
title Lysozyme (1sec) And Uv Lasr Excited Fluorescence
authors X.Vernede, B.Lavault, J.Ohana, D.Nurizzo, J.Joly, L.Jacquamet, F.F F.Cipriani, D.Bourgeois
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C, Allergen Gal D 4, G
Ec: 3.2.1.17
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Cell_line: White Egg
Other_details: Sigma-Aldrich
symmetry Space Group: P 43 21 2
R_factor 0.196 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.730 78.730 36.916 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand
enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceUV laser-excited fluorescence as a tool for the visualization of protein crystals mounted in loops., Vernede X, Lavault B, Ohana J, Nurizzo D, Joly J, Jacquamet L, Felisaz F, Cipriani F, Bourgeois D, Acta Crystallogr D Biol Crystallogr. 2006 Mar;62(Pt 3):253-61. Epub 2006, Feb 22. PMID:16510972
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (2c8o.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 2C8O
  • Likely Quarternary Molecular Structure file(s) for 2C8O
  • Structure Factors (132 Kb)
  • Retrieve 2C8O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C8O from S2C, [Save to disk]
  • Re-refined 2c8o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2C8O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C8O
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C8O, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c8o] [2c8o_A]
  • SWISS-PROT database: [P00698]
  • Domain organization of [LYSC_CHICK] by SWISSPFAM
  • Domain found in 2C8O: [LYZ1 ] by SMART
  • Other resources with information on 2C8O
  • Community annotation for 2C8O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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