2C9H Transferase date Dec 12, 2005
title Structure Of Mitochondrial Beta-Ketoacyl Synthase
authors G.Bunkoczi, X.Wu, C.Smee, O.Gileadi, C.Arrowsmith, A.Edwards, M.Su J.Weigelt, F.Von Delft, U.Oppermann
compound source
Molecule: Mitochondrial Beta-Ketoacyl Synthase
Chain: A
Ec: 2.3.1.41
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 21 21 2
R_factor 0.177 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.725 58.056 58.987 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CSD, NI enzyme Transferase E.C.2.3.1.41 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (2c9h.pdb1.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 2C9H
  • CSU: Contacts of Structural Units for 2C9H
  • Likely Quarternary Molecular Structure file(s) for 2C9H
  • Structure Factors (499 Kb)
  • Retrieve 2C9H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C9H from S2C, [Save to disk]
  • Re-refined 2c9h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2C9H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C9H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C9H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c9h] [2c9h_A]
  • SWISS-PROT database: [Q9NWU1]
  • Domain organization of [OXSM_HUMAN] by SWISSPFAM
  • Other resources with information on 2C9H
  • Community annotation for 2C9H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science