2C9N Viral Protein date Dec 13, 2005
title Structure Of The Epstein-Barr Virus Zebra Protein At Approxi Angstrom Resolution
authors C.Petosa, P.Morand, F.Baudin, M.Moulin, J.B.Artero, C.W.Muller
compound source
Molecule: 5'-D(Cpapcptpgpapcptpcpap T)-3'
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Human Herpesvirus 4
Organism_taxid: 10376

Molecule: 5'-D(Cpaptpgpapgptpcpapgp T)-3'
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Human Herpesvirus 4
Organism_taxid: 10376

Molecule: Bzlf1 Trans-Activator Protein
Chain: Y, Z
Fragment: Dna-Binding And Dimerization Domain, Residues 175
Synonym: Eb1, Zebra
Engineered: Yes

Organism_scientific: Human Herpesvirus 4
Organism_taxid: 10376
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.368 R_Free 0.366
crystal
cell
length a length b length c angle alpha angle beta angle gamma
185.300 36.370 26.470 90.00 95.25 90.00
method X-Ray Diffractionresolution 3.30 Å
Gene
Ontology
ChainFunctionProcessComponent
Z, Y


Primary referenceStructural basis of lytic cycle activation by the Epstein-Barr virus ZEBRA protein., Petosa C, Morand P, Baudin F, Moulin M, Artero JB, Muller CW, Mol Cell. 2006 Feb 17;21(4):565-72. PMID:16483937
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (2c9n.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 2C9N
  • Likely Quarternary Molecular Structure file(s) for 2C9N
  • Structure Factors (34 Kb)
  • Retrieve 2C9N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C9N from S2C, [Save to disk]
  • Re-refined 2c9n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2C9N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C9N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C9N, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c9n] [2c9n_B] [2c9n_Z] [2c9n_A] [2c9n_Y]
  • SWISS-PROT database: [P03206]
  • Domain organization of [BZLF1_EBVB9] by SWISSPFAM
  • Other resources with information on 2C9N
  • Community annotation for 2C9N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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