2C9V Oxidoreductase date Dec 14, 2005
title Atomic Resolution Structure Of Cu-Zn Human Superoxide Dismut
authors R.W.Strange, S.V.Antonyuk, M.A.Hough, P.A.Doucette, J.S.Valentin S.S.Hasnain
compound source
Molecule: Superoxide Dismutase [Cu-Zn]
Chain: A, F
Ec: 1.15.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932
symmetry Space Group: P 1 21 1
R_factor 0.131 R_Free 0.158
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.605 67.368 52.532 90.00 106.54 90.00
method X-Ray Diffractionresolution 1.07 Å
ligand CU, NA, SO4, ZN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A
  • superoxide dismutase activit...
  • protein binding
  • anterograde axonal transport...
  • retrograde axonal transport

  • Primary referenceVariable metallation of human superoxide dismutase: atomic resolution crystal structures of Cu-Zn, Zn-Zn and as-isolated wild-type enzymes., Strange RW, Antonyuk SV, Hough MA, Doucette PA, Valentine JS, Hasnain SS, J Mol Biol. 2006 Mar 10;356(5):1152-62. Epub 2005 Dec 12. PMID:16406071
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (2c9v.pdb1.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 2C9V
  • CSU: Contacts of Structural Units for 2C9V
  • Likely Quarternary Molecular Structure file(s) for 2C9V
  • Structure Factors (736 Kb)
  • Retrieve 2C9V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C9V from S2C, [Save to disk]
  • Re-refined 2c9v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C9V, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c9v_F] [2c9v_A] [2c9v]
  • SWISS-PROT database: [P00441]
  • Domain organization of [SODC_HUMAN] by SWISSPFAM
  • Other resources with information on 2C9V
  • Community annotation for 2C9V at PDBWiki (http://pdbwiki.org)
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