2CDY	Oxidoreductase	date	Jan 31, 2006
title	Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus Rad
authors	R.Dennis, E.Micossi, J.Mccarthy, E.Moe, E.Gordon, G.Leonard, S.Mcs
compound		source
Molecule: Superoxide Dismutase [Mn] Chain: A, B, C, D Synonym: Mnsod Ec: 1.15.1.1 Engineered: Yes		Organism_scientific: Deinococcus Radiodurans Organism_taxid: 243230 Strain: R1 Atcc: 13939 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Plyss Expression_system_vector: Gateway Pdest17
symmetry	Space Group: P 1 21 1	R_factor 0.173 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.577 87.100 116.418 90.00 92.10 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	MN	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B superoxide dismutase activit...
Primary reference	Structure of the manganese superoxide dismutase from Deinococcus radiodurans in two crystal forms., Dennis RJ, Micossi E, McCarthy J, Moe E, Gordon EJ, Kozielski-Stuhrmann S, Leonard GA, McSweeney S, Acta Crystallograph Sect F Struct Biol Cryst Commun. 2006 Apr 1;62(Pt, 4):325-9. Epub 2006 Mar 25. PMID:16582477

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk] Biological Unit Coordinates (2cdy.pdb1.gz) 38 Kb Biological Unit Coordinates (2cdy.pdb2.gz) 36 Kb Biological Unit Coordinates (2cdy.pdb3.gz) 36 Kb Biological Unit Coordinates (2cdy.pdb4.gz) 37 Kb LPC: Ligand-Protein Contacts for 2CDY CSU: Contacts of Structural Units for 2CDY Likely Quarternary Molecular Structure file(s) for 2CDY Structure Factors (350 Kb) Retrieve 2CDY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2CDY from S2C, [Save to disk] Re-refined 2cdy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2CDY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2CDY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2CDY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2cdy_B] [2cdy] [2cdy_D] [2cdy_C] [2cdy_A] SWISS-PROT database: [Q9RUV2] Domain organization of [SODM_DEIRA] by SWISSPFAM

Other resources with information on 2CDY

Community annotation for 2CDY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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