2CF7 Peroxide Resistance date Feb 16, 2006
title Asp74ala Mutant Crystal Structure For Dps-Like Peroxide Resi Protein Dpr From Streptococcus Suis.
authors A.Kauko, A.T.Pulliainen, S.Haataja, J.Finne, A.C.Papageorgiou
compound source
Molecule: Dpr
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Synonym: Dps-Like Peroxide Resistance Protein
Engineered: Yes
Mutation: Yes
Other_details: N-Terminus Truncated And First Seven Residue
Organism_scientific: Streptococcus Suis
Organism_taxid: 1307
Strain: D282
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet30ek
symmetry Space Group: P 21 21 21
R_factor 0.153 R_Free 0.177
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.930 133.670 135.630 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand CA, CL, EPE enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceIron incorporation in Streptococcus suis Dps-like peroxide resistance protein Dpr requires mobility in the ferroxidase center and leads to the formation of a ferrihydrite-like core., Kauko A, Pulliainen AT, Haataja S, Meyer-Klaucke W, Finne J, Papageorgiou AC, J Mol Biol. 2006 Nov 17;364(1):97-109. Epub 2006 Aug 26. PMID:16997323
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (343 Kb) [Save to disk]
  • Biological Unit Coordinates (2cf7.pdb1.gz) 335 Kb
  • LPC: Ligand-Protein Contacts for 2CF7
  • CSU: Contacts of Structural Units for 2CF7
  • Likely Quarternary Molecular Structure file(s) for 2CF7
  • Structure Factors (4658 Kb)
  • Retrieve 2CF7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CF7 from S2C, [Save to disk]
  • Re-refined 2cf7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CF7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CF7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CF7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cf7_I] [2cf7_J] [2cf7_H] [2cf7_C] [2cf7_B] [2cf7_A] [2cf7_G] [2cf7_E] [2cf7_F] [2cf7] [2cf7_K] [2cf7_D] [2cf7_L]
  • SWISS-PROT database: [P0CB53]
  • Domain organization of [DPS_STRSU] by SWISSPFAM
  • Other resources with information on 2CF7
  • Community annotation for 2CF7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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