2CHD	Protein Transport	date	Mar 14, 2006
title	Crystal Structure Of The C2a Domain Of Rabphilin-3a
authors	M.Biadene, P.Montaville, G.M.Sheldrick, S.Becker
compound		source
Molecule: Rabphilin-3a Chain: A Fragment: C2a Domain, Residues 371-510 Synonym: Exophilin-1 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector: Pgex-2t Expression_system_plasmid: Pgex-2t-Rabc2a(E371-I510)
symmetry	Space Group: P 21 21 21	R_factor 0.198 R_Free 0.269
crystal cell	length a length b length c angle alpha angle beta angle gamma 37.870 39.160 88.850 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.92 Å
ligand	GOL	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of the C2A domain of rabphilin-3A., Biadene M, Montaville P, Sheldrick GM, Becker S, Acta Crystallogr D Biol Crystallogr. 2006 Jul;62(Pt 7):793-9. Epub 2006, Jun 20. PMID:16790935

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk] Biological Unit Coordinates (2chd.pdb1.gz) 23 Kb LPC: Ligand-Protein Contacts for 2CHD CSU: Contacts of Structural Units for 2CHD Likely Quarternary Molecular Structure file(s) for 2CHD Structure Factors (609 Kb) Retrieve 2CHD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2CHD from S2C, [Save to disk] Re-refined 2chd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2CHD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2CHD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2CHD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2chd_A] [2chd] SWISS-PROT database: [P47709] Domain organization of [RP3A_RAT] by SWISSPFAM Domain found in 2CHD: [C2 ] by SMART

Other resources with information on 2CHD

Community annotation for 2CHD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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