2CLS Nucleotide Binding Protein date Apr 28, 2006
title The Crystal Structure Of The Human Rnd1 Gtpase In The Active State
authors A.C.W.Pike, X.Yang, S.Colebrook, O.Gileadi, F.Sobott, J.Bray, L.We B.Marsden, Y.Zhao, G.Schoch, J.Elkins, J.E.Debreczeni, A.P.Turnb Delft, C.Arrowsmith, A.Edwards, J.Weigelt, M.Sundstrom, D.Doyle
compound source
Molecule: Rho-Related Gtp-Binding Protein Rho6
Chain: A, B
Fragment: Residues 5-200
Synonym: Rho Family Gtpase 1, Rnd1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Plic-Sgc1
Other_details: Mammalian Gene Collection(Mgc)
symmetry Space Group: C 2 2 21
R_factor 0.205 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.168 67.762 206.409 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.31 Å
ligand GTP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (2cls.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (2cls.pdb2.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 2CLS
  • CSU: Contacts of Structural Units for 2CLS
  • Likely Quarternary Molecular Structure file(s) for 2CLS
  • Structure Factors (285 Kb)
  • Retrieve 2CLS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CLS from S2C, [Save to disk]
  • Re-refined 2cls structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CLS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CLS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CLS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cls_B] [2cls] [2cls_A]
  • SWISS-PROT database: [Q92730]
  • Domain organization of [RND1_HUMAN] by SWISSPFAM
  • Domain found in 2CLS: [RHO ] by SMART
  • Other resources with information on 2CLS
  • Community annotation for 2CLS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science