2CM5	Protein Transport	date	May 04, 2006
title	Crystal Structure Of The C2b Domain Of Rabphilin
authors	C.Schlicker, P.Montaville, G.M.Sheldrick, S.Becker
compound		source
Molecule: Rabphilin-3a Chain: A Fragment: C2b Domain And Linker, Residues 519-684 Synonym: C2b Domain, Exophilin-1 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B843 Expression_system_vector: Pgex-2t Expression_system_plasmid: Pgex-2t-Rabphilin3a-519-684
symmetry	Space Group: P 21 21 2	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.898 60.043 41.928 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.28 Å
ligand	CA, MSE	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	The C2A-C2B linker defines the high affinity Ca(2+) binding mode of rabphilin-3A., Montaville P, Schlicker C, Leonov A, Zweckstetter M, Sheldrick GM, Becker S, J Biol Chem. 2007 Feb 16;282(7):5015-25. Epub 2006 Dec 13. PMID:17166855

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk] Biological Unit Coordinates (2cm5.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 2CM5 CSU: Contacts of Structural Units for 2CM5 Likely Quarternary Molecular Structure file(s) for 2CM5 Structure Factors (559 Kb) Retrieve 2CM5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2CM5 from S2C, [Save to disk] Re-refined 2cm5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2CM5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2CM5

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2CM5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2cm5] [2cm5_A] SWISS-PROT database: [P47709] Domain organization of [RP3A_RAT] by SWISSPFAM Domain found in 2CM5: [C2 ] by SMART

Other resources with information on 2CM5

Community annotation for 2CM5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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