2CM7 Hydrolase date May 04, 2006
title Structural Basis For Inhibition Of Protein Tyrosine Phosphat Isothiazolidinone Heterocyclic Phosphonate Mimetics
authors P.J.Ala, L.Gonneville, M.C.Hillman, M.Becker-Pasha, M.Wei, B.G.Re R.Klabe, E.W.Yue, B.Wayland, B.Douty, A.P.Combs, P.Polam, Z.Wasse M.Bower, T.C.Burn, G.F.Hollis, R.Wynn
compound source
Molecule: Tyrosine-Protein Phosphatase Non-Receptor Type 1
Chain: A
Fragment: Catalytic Domain, Residues 1-321
Synonym: Protein Tyrosine Phosphatase 1b, Ptp-1b
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 1 21 1
R_factor 0.199 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.880 88.380 49.840 90.00 96.84 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand IZD BindingDB enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for inhibition of protein-tyrosine phosphatase 1B by isothiazolidinone heterocyclic phosphonate mimetics., Ala PJ, Gonneville L, Hillman MC, Becker-Pasha M, Wei M, Reid BG, Klabe R, Yue EW, Wayland B, Douty B, Polam P, Wasserman Z, Bower M, Combs AP, Burn TC, Hollis GF, Wynn R, J Biol Chem. 2006 Oct 27;281(43):32784-95. Epub 2006 Aug 17. PMID:16916797
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (2cm7.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 2CM7
  • CSU: Contacts of Structural Units for 2CM7
  • Likely Quarternary Molecular Structure file(s) for 2CM7
  • Retrieve 2CM7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CM7 from S2C, [Save to disk]
  • View 2CM7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CM7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CM7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cm7_A] [2cm7]
  • SWISS-PROT database: [P18031]
  • Domain organization of [PTN1_HUMAN] by SWISSPFAM
  • Domains found in 2CM7: [PTPc] [PTPc_DSPc ] by SMART
  • Other resources with information on 2CM7
  • Community annotation for 2CM7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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