2CMD Oxidoreductase(Nad(A)-Choh(D)) date Sep 23, 1992
title The Crystal Structure Of E.Coli Malate Dehydrogenase: A Comp Apoenzyme And Citrate At 1.87 Angstroms Resolution
authors M.D.Hall, L.J.Banaszak
compound source
Molecule: Malate Dehydrogenase
Chain: A
Ec: 1.1.1.37
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.188 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.950 42.900 84.050 90.00 130.21 90.00
method X-Ray Diffractionresolution 1.87 Å
ligand CIT enzyme Oxidoreductase E.C.1.1.1.37 BRENDA
related structures by homologous chain: 1EMD
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of Escherichia coli malate dehydrogenase. A complex of the apoenzyme and citrate at 1.87 A resolution., Hall MD, Levitt DG, Banaszak LJ, J Mol Biol 1992 Aug 5;226(3):867-82. PMID:1507230
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (2cmd.pdb1.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 2CMD
  • CSU: Contacts of Structural Units for 2CMD
  • Likely Quarternary Molecular Structure file(s) for 2CMD
  • Retrieve 2CMD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CMD from S2C, [Save to disk]
    • View 2CMD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2CMD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CMD, from MSDmotif at EBI
  • Genome occurence of 2CMD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2cmd_1, region 1-145 [Jmol] [rasmolscript] [script source]
        - Domain d2cmd_2, region 146-312 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cmd_A] [2cmd]
  • SWISS-PROT database: [P61889]
  • Domain organization of [MDH_ECOLI] by SWISSPFAM
    • Other resources with information on 2CMD
  • Community annotation for 2CMD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 2CMD from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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