2CO8 Metal Binding Protein date May 17, 2005
title Solution Structures Of The Lim Domain Of Human Nedd9 Interac Protein With Calponin Homology And Lim Domains
authors M.Sato, T.Tomizawa, K.Saito, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoy Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Nedd9 Interacting Protein With Calponin Homology Domains;
Chain: A
Fragment: Lim Domain
Synonym: Molecule Interacting With Casl Protein 1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nical
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040614-06
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
note 2CO8 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (393 Kb) [Save to disk]
  • Biological Unit Coordinates (2co8.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 2CO8
  • CSU: Contacts of Structural Units for 2CO8
  • Original NMR restraints for 2CO8 from PDB
  • Retrieve 2CO8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CO8 from S2C, [Save to disk]
    • View 2CO8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2CO8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CO8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2co8] [2co8_A]
  • SWISS-PROT database: [Q8TDZ2]
  • Domain organization of [MICA1_HUMAN] by SWISSPFAM
  • Domain found in 2CO8: [LIM ] by SMART
    • Other resources with information on 2CO8
  • Community annotation for 2CO8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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