2CPS Viral Protein date Apr 16, 1998
title Solution Nmr Structures Of The Major Coat Protein Of Filamen Bacteriophage M13 Solubilized In Sodium Dodecyl Sulphate Mi Lowest Energy Structures
authors C.H.M.Papavoine, B.E.C.Christiaans, R.H.A.Folmer, R.N.H.Konings C.W.Hilbers
compound source
Molecule: M13 Major Coat Protein
Chain: A
Synonym: M13 Gene-Viii-Protein Or M13 Gviiip
Engineered: Yes
 Organism_scientific: Enterobacteria Phage M13
Organism_taxid: 10870
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: M13
methodSolution NMR
related structures by homologous chain: 2CPB
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the M13 major coat protein in detergent micelles: a basis for a model of phage assembly involving specific residues., Papavoine CH, Christiaans BE, Folmer RH, Konings RN, Hilbers CW, J Mol Biol 1998 Sep 18;282(2):401-19. PMID:9735296
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (314 Kb) [Save to disk]
  • Biological Unit Coordinates (2cps.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 2CPS
  • Original NMR restraints for 2CPS from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 2CPS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CPS from S2C, [Save to disk]
    • View 2CPS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2CPS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CPS, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2cps__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cps_A] [2cps]
  • SWISS-PROT database: [P69541]
  • Domain organization of [CAPSD_BPM13] by SWISSPFAM
    • Other resources with information on 2CPS
  • Community annotation for 2CPS at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 2CPS from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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