2CSD Crystal structure of Topoisomerase V (61 kDa fragment) date
authors Taneja, B., Patel, A., Slesarev, A., Mondragon, A.
compound source
symmetry
R_factor
R_Free 0.30787
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the N-terminal fragment of topoisomerase V reveals a new family of topoisomerases., Taneja B, Patel A, Slesarev A, Mondragon A, EMBO J. 2006 Jan 25;25(2):398-408. Epub 2006 Jan 5. PMID:16395333
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • Biological Unit Coordinates (2csd.pdb1.gz) 84 Kb
  • Biological Unit Coordinates (2csd.pdb2.gz) 84 Kb
  • CSU: Contacts of Structural Units for 2CSD
  • Likely Quarternary Molecular Structure file(s) for 2CSD
  • Structure Factors (403 Kb)
  • Retrieve 2CSD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CSD from S2C, [Save to disk]
  • Re-refined 2csd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CSD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CSD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CSD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2csd_A] [2csd_B] [2csd]
  • SWISS-PROT database: [Q977W1]
  • Domain organization of [Q977W1_METKA] by SWISSPFAM
  • Domains found in 2CSD: [ENDO3c] [HhH1 ] by SMART
  • Other resources with information on 2CSD
  • Community annotation for 2CSD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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