2CVL Structural Genomics, Unknown Function date Jun 08, 2005
title Crystal Structure Of Ttha0137 From Thermus Thermophilus Hb8
authors H.Wang, K.Murayama, T.Terada, M.Shirouzu, S.Kuramitsu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Protein Translation Initiation Inhibitor
Chain: A, B, C, D, E, F
Synonym: Ttha0137
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 1 21 1
R_factor 0.189 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.055 145.296 50.305 90.00 118.52 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (2cvl.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (2cvl.pdb2.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 2CVL
  • CSU: Contacts of Structural Units for 2CVL
  • Likely Quarternary Molecular Structure file(s) for 2CVL
  • Structure Factors (561 Kb)
  • Retrieve 2CVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CVL from S2C, [Save to disk]
  • Re-refined 2cvl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2CVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2CVL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CVL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cvl_E] [2cvl_A] [2cvl_C] [2cvl_B] [2cvl] [2cvl_F] [2cvl_D]
  • SWISS-PROT database: [Q5SM06]
  • Domain organization of [Q5SM06_THET8] by SWISSPFAM
    • Other resources with information on 2CVL
  • Community annotation for 2CVL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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