2CW0 Transferase date Jun 15, 2005
title Crystal Structure Of Thermus Thermophilus Rna Polymerase Hol 3.3 Angstroms Resolution
authors S.Tuske, S.G.Sarafianos, X.Wang, B.Hudson, E.Sineva, J.Mukhopadhy J.J.Birktoft, O.Leroy, S.Ismail, A.D.Clark Jr., C.Dharia, A.Napo O.Laptenko, J.Lee, S.Borukhov, R.H.Ebright, E.Arnold
compound source
Molecule: Dna-Directed Rna Polymerase Alpha Chain
Chain: A, B, K, L
Synonym: Dna Directed Rna Polymerase Holoenzyme Subunit Alp Alpha Subunit, Transcriptase Alpha Chain, Rna Polymerase Al Subunit;
Ec: 2.7.7.6
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: Dna-Directed Rna Polymerase Beta Chain
Chain: C, M
Synonym: Dna Directed Rna Polymerase Holoenzyme Subunit Bet Beta Subunit, Transcriptase Beta Chain, Rna Polymerase Beta
Ec: 2.7.7.6
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8

Molecule: Dna-Directed Rna Polymerase Beta' Chain
Chain: D, N
Synonym: Dna Directed Rna Polymerase Holoenzyme Subunit Bet Rnap Beta' Subunit, Transcriptase Beta' Chain, Rna Polymera Subunit;
Ec: 2.7.7.6
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8

Molecule: Rna Polymerase Omega Chain
Chain: E, O
Synonym: Dna Directed Rna Polymerase Holoenzyme Subunit Ome
Ec: 2.7.7.6
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: Rna Polymerase Sigma Factor Rpod
Chain: F, P
Synonym: Dna Directed Rna Polymerase Holoenzyme Subunit Sig
Ec: 2.7.7.6
Organism_scientific: Thermus Thermophilus
Organism_taxid: 262724
Strain: Hb27
symmetry Space Group: P 32
R_factor 0.282 R_Free 0.320
crystal
cell
length a length b length c angle alpha angle beta angle gamma
236.150 236.150 249.880 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.30 Å
ligand MG, ZN enzyme Transferase E.C.2.7.7.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, K, B, L


F, P
  • bacterial sigma factor activ...


    • M, C


    N, D


    O, E


    Primary referenceInhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation., Tuske S, Sarafianos SG, Wang X, Hudson B, Sineva E, Mukhopadhyay J, Birktoft JJ, Leroy O, Ismail S, Clark AD Jr, Dharia C, Napoli A, Laptenko O, Lee J, Borukhov S, Ebright RH, Arnold E, Cell 2005 Aug 26;122(4):541-52. PMID:16122422
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1073 Kb) [Save to disk]
  • Biological Unit Coordinates (2cw0.pdb1.gz) 538 Kb
  • Biological Unit Coordinates (2cw0.pdb2.gz) 540 Kb
  • LPC: Ligand-Protein Contacts for 2CW0
  • CSU: Contacts of Structural Units for 2CW0
  • Likely Quarternary Molecular Structure file(s) for 2CW0
  • Structure Factors (1141 Kb)
  • Retrieve 2CW0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CW0 from S2C, [Save to disk]
    • View 2CW0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2CW0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CW0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cw0_C] [2cw0_M] [2cw0_P] [2cw0_D] [2cw0_A] [2cw0_O] [2cw0_F] [2cw0_L] [2cw0] [2cw0_B] [2cw0_N] [2cw0_K] [2cw0_E]
  • SWISS-PROT database: [Q72L95] [Q5SHR6] [Q8RQE9] [Q8RQE8] [Q8RQE7]
  • Domain organization of [Q72L95_THET2] [RPOA_THET8] [RPOB_THET8] [RPOC_THET8] [RPOZ_THET8] by SWISSPFAM
  • Domains found in 2CW0: [HhH1] [RNA_pol_Rpb6] [RPOLA_N] [RPOLD ] by SMART
    • Other resources with information on 2CW0
  • Community annotation for 2CW0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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