2CXF Protein Binding date Jun 29, 2005
title Run Domain Of Rap2 Interacting Protein X, Crystallized In C2 Space Group
authors M.Kukimoto-Niino, K.Murayama, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Rap2 Interacting Protein X
Chain: A
Fragment: Run Domain
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Px040220-04
Other_details: Cell-Free Protein Synthesis
symmetry Space Group: C 1 2 1
R_factor 0.237 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.619 41.592 62.132 90.00 105.95 90.00
method X-Ray Diffractionresolution 3.07 Å
ligand MSE enzyme
Primary referenceCrystal Structure of the RUN Domain of the RAP2-interacting Protein x., Kukimoto-Niino M, Takagi T, Akasaka R, Murayama K, Uchikubo-Kamo T, Terada T, Inoue M, Watanabe S, Tanaka A, Hayashizaki Y, Kigawa T, Shirouzu M, Yokoyama S, J Biol Chem. 2006 Oct 20;281(42):31843-31853. Epub 2006 Aug 23. PMID:16928684
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (2cxf.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 2CXF
  • CSU: Contacts of Structural Units for 2CXF
  • Likely Quarternary Molecular Structure file(s) for 2CXF
  • Structure Factors (26 Kb)
  • Retrieve 2CXF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CXF from S2C, [Save to disk]
  • Re-refined 2cxf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CXF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CXF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CXF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cxf] [2cxf_A]
  • SWISS-PROT database: [Q9D394]
  • Domain organization of [RUFY3_MOUSE] by SWISSPFAM
  • Domain found in 2CXF: [RUN ] by SMART
  • Other resources with information on 2CXF
  • Community annotation for 2CXF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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