2CXG Glycosyltransferase date May 08, 1998
title Cyclodextrin Glycosyltransferase Complexed To The Inhibitor
authors B.V.Strokopytov, J.C.M.Uitdehaag, R.Ruiterkamp, B.W.Dijkstra
compound source
Molecule: Cyclodextrin Glycosyltransferase
Chain: A
Synonym: Cgtase
Ec: 2.4.1.19
Other_details: Complexed To An Acarbose-Derived Maltotetrao Inhibitor
Organism_scientific: Bacillus Circulans
Organism_taxid: 1397
Strain: 251
symmetry Space Group: P 21 21 21
R_factor 0.182 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.887 111.903 65.748 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand ACI, CA, G6D, GLC enzyme Transferase E.C.2.4.1.19 BRENDA
note 2CXG supersedes 1CXG
related structures by homologous chain: 1CGU, 1CGW
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray structure of cyclodextrin glycosyltransferase complexed with acarbose. Implications for the catalytic mechanism of glycosidases., Strokopytov B, Penninga D, Rozeboom HJ, Kalk KH, Dijkhuizen L, Dijkstra BW, Biochemistry 1995 Feb 21;34(7):2234-40. PMID:7857935
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (2cxg.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 2CXG
  • CSU: Contacts of Structural Units for 2CXG
  • Likely Quarternary Molecular Structure file(s) for 2CXG
  • Retrieve 2CXG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CXG from S2C, [Save to disk]
  • View 2CXG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CXG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CXG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2cxg_4, region 1-406 [Jmol] [rasmolscript] [script source]
        - Domain d2cxg_3, region 407-495 [Jmol] [rasmolscript] [script source]
        - Domain d2cxg_1, region 496-581 [Jmol] [rasmolscript] [script source]
        - Domain d2cxg_2, region 582-686 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cxg_A] [2cxg]
  • SWISS-PROT database: [P43379]
  • Domain organization of [CDGT2_BACCI] by SWISSPFAM
  • Domains found in 2CXG: [Aamy] [Aamy_C] [CBM_2 ] by SMART
  • Other resources with information on 2CXG
  • Community annotation for 2CXG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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