2CYJ Structural Genomics, Unknown Function date Jul 07, 2005
title Crystal Structure Of Conserved Hypothetical Protein Ph1505 F Pyrococcus Horikoshii Ot3
authors K.Ito, R.Arai, T.Kamo-Uchikubo, M.Shirouzu, S.Yokoyama, Riken Str Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Hypothetical Protein Ph1505
Chain: A
Engineered: Yes
Organism_scientific: Pyrococcus Horikoshii
Organism_taxid: 70601
Strain: Ot3
Gene: Ph1505
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Codonplus-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 21 21 21
R_factor 0.179 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
27.761 45.882 82.851 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand ACT, OCS, SO4 enzyme
note 2CYJ is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (2cyj.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 2CYJ
  • CSU: Contacts of Structural Units for 2CYJ
  • Likely Quarternary Molecular Structure file(s) for 2CYJ
  • Structure Factors (274 Kb)
  • Retrieve 2CYJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CYJ from S2C, [Save to disk]
  • Re-refined 2cyj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CYJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CYJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CYJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cyj] [2cyj_A]
  • SWISS-PROT database: [O59174]
  • Domain organization of [O59174_PYRHO] by SWISSPFAM
  • Other resources with information on 2CYJ
  • Community annotation for 2CYJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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