2CYY Dna Binding Protein date Jul 08, 2005
title Crystal Structure Of Ph1519 From Pyrococcus Horikosii Ot3
authors N.Okazaki, N.Nakano, A.Shinkai, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Putative Hth-Type Transcriptional Regulator Ph151
Chain: A
Engineered: Yes
 Organism_scientific: Pyrococcus Horikoshii
Organism_taxid: 53953
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)-Ril-X
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 61 2 2
R_factor 0.219 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.573 130.573 47.716 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand CA, GLN, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (2cyy.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (2cyy.pdb2.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 2CYY
  • CSU: Contacts of Structural Units for 2CYY
  • Likely Quarternary Molecular Structure file(s) for 2CYY
  • Structure Factors (178 Kb)
  • Retrieve 2CYY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CYY from S2C, [Save to disk]
  • Re-refined 2cyy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2CYY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2CYY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CYY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cyy] [2cyy_A]
  • SWISS-PROT database: [O59188]
  • Domain organization of [REG6_PYRHO] by SWISSPFAM
  • Domain found in 2CYY: [HTH_ASNC ] by SMART
    • Other resources with information on 2CYY
  • Community annotation for 2CYY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science