2CZW Ribosome, Hydrolase date Jul 19, 2005
title Crystal Structure Analysis Of Protein Component Ph1496p Of P.Horikoshii Ribonuclease P
authors H.Fukuhara, M.Kifusa, M.Watanabe, A.Terada, T.Honda, T.Numata, Y.K M.Kimura
compound source
Molecule: 50s Ribosomal Protein L7ae
Chain: A
Synonym: Ribonuclease P Component Protein
Engineered: Yes
 Organism_scientific: Pyrococcus Horikoshii
Organism_taxid: 53953
Gene: Ph1496
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-22b
symmetry Space Group: P 21 21 2
R_factor 0.206 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.561 82.940 32.189 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A
  • ribonuclease P activity


    • Primary referenceA fifth protein subunit Ph1496p elevates the optimum temperature for the ribonuclease P activity from Pyrococcus horikoshii OT3., Fukuhara H, Kifusa M, Watanabe M, Terada A, Honda T, Numata T, Kakuta Y, Kimura M, Biochem Biophys Res Commun. 2006 May 12;343(3):956-64. Epub 2006 Mar 15. PMID:16574071
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (2czw.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 2CZW
  • Likely Quarternary Molecular Structure file(s) for 2CZW
  • Structure Factors (189 Kb)
  • Retrieve 2CZW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CZW from S2C, [Save to disk]
  • Re-refined 2czw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2CZW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2CZW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CZW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2czw_A] [2czw]
  • SWISS-PROT database: [P62009]
  • Domain organization of [RL7A_PYRHO] by SWISSPFAM
    • Other resources with information on 2CZW
  • Community annotation for 2CZW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science