2D10	Cell Adhesion	date	Aug 11, 2005
title	Crystal Structure Of The Radixin Ferm Domain Complexed With C-Terminal Tail Peptide
authors	S.Terawaki, R.Maesaki, T.Hakoshima
compound		source
Molecule: Radixin Chain: A, B, C, D Fragment: Ferm Domain (Residues 3-312) Synonym: Esp10 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex4t-3
Molecule: Ezrin-Radixin-Moesin Binding Phosphoprotein 50 Chain: E, F, G, H Fragment: Residues 331-358 Synonym: Sodium-Hydrogen Exchanger Regulatory Factor 1, Ebp H+, Exchange Regulatory Cofactor Nhe-Rf, Nherf-1, Regulato Cofactor Of Na+, H+, Exchanger, Solute Carrier Family 9 Is Regulatory Factor 1; Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Humans.
symmetry	Space Group: P 21 21 21	R_factor 0.229 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.388 146.277 177.763 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
Gene Ontology	Chain Function Process Component A, B, C, D F, E, H, G
Primary reference	Structural basis for NHERF recognition by ERM proteins., Terawaki S, Maesaki R, Hakoshima T, Structure. 2006 Apr;14(4):777-89. PMID:16615918

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (222 Kb) [Save to disk] Biological Unit Coordinates (2d10.pdb1.gz) 57 Kb Biological Unit Coordinates (2d10.pdb2.gz) 56 Kb Biological Unit Coordinates (2d10.pdb3.gz) 56 Kb Biological Unit Coordinates (2d10.pdb4.gz) 57 Kb CSU: Contacts of Structural Units for 2D10 Likely Quarternary Molecular Structure file(s) for 2D10 Structure Factors (533 Kb) Retrieve 2D10 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2D10 from S2C, [Save to disk] Re-refined 2d10 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2D10 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2D10

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2D10, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2d10_G] [2d10_D] [2d10] [2d10_A] [2d10_F] [2d10_B] [2d10_E] [2d10_H] [2d10_C] SWISS-PROT database: [O14745] [P26043] Belongs to the ezrin/radixin/moesin-binding phosphoprotein 50 (ebp50) family according to TCDB. Domain organization of [NHRF1_HUMAN] [RADI_MOUSE] by SWISSPFAM Domains found in 2D10: [B41] [FERM_C ] by SMART

Other resources with information on 2D10

Community annotation for 2D10 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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