2D2Q	Cell Adhesion	date	Sep 15, 2005
title	Crystal Structure Of The Dimerized Radixin Ferm Domain
authors	K.Kitano, F.Yusa, T.Hakoshima
compound		source
Molecule: Radixin Chain: A, B Fragment: Ferm Domain (Residues 1-310) Synonym: Esp10 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex4t-3
symmetry	Space Group: P 1 21 1	R_factor 0.222 R_Free 0.269
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.218 70.218 110.810 90.00 98.97 90.00
method	X-Ray Diffraction	resolution	2.80 Å
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of dimerized radixin FERM domain suggests a novel masking motif in C-terminal residues 295-304., Kitano K, Yusa F, Hakoshima T, Acta Crystallograph Sect F Struct Biol Cryst Commun. 2006 Apr 1;62(Pt, 4):340-5. Epub 2006 Mar 25. PMID:16582480

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk] Biological Unit Coordinates (2d2q.pdb1.gz) 51 Kb Biological Unit Coordinates (2d2q.pdb2.gz) 51 Kb CSU: Contacts of Structural Units for 2D2Q Likely Quarternary Molecular Structure file(s) for 2D2Q Structure Factors (276 Kb) Retrieve 2D2Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2D2Q from S2C, [Save to disk] Re-refined 2d2q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2D2Q in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2D2Q

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2D2Q, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2d2q_B] [2d2q_A] [2d2q] SWISS-PROT database: [P26043] Domain organization of [RADI_MOUSE] by SWISSPFAM Domains found in 2D2Q: [B41] [FERM_C ] by SMART

Other resources with information on 2D2Q

Community annotation for 2D2Q at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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