2D3I Metal Transport date Sep 28, 2005
title Crystal Structure Of Aluminum-Bound Ovotransferrin At 2.15 A Resolution
authors K.Mizutani, B.Mikami, S.Aibara, M.Hirose
compound source
Molecule: Ovotransferrin
Chain: A
Synonym: Conalbumin, Allergen Gal D 3, Gal D III, Serum Tra
 Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Tissue: Egg White
symmetry Space Group: P 1 21 1
R_factor 0.206 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.353 59.184 87.974 90.00 95.72 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand AL, BCT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of aluminium-bound ovotransferrin at 2.15 Angstroms resolution., Mizutani K, Mikami B, Aibara S, Hirose M, Acta Crystallogr D Biol Crystallogr. 2005 Dec;61(Pt 12):1636-42. Epub 2005, Nov 19. PMID:16301797
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (2d3i.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 2D3I
  • CSU: Contacts of Structural Units for 2D3I
  • Likely Quarternary Molecular Structure file(s) for 2D3I
  • Structure Factors (299 Kb)
  • Retrieve 2D3I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D3I from S2C, [Save to disk]
  • Re-refined 2d3i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2D3I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2D3I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2D3I, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d3i] [2d3i_A]
  • SWISS-PROT database: [P02789]
  • Domain organization of [TRFE_CHICK] by SWISSPFAM
  • Domain found in 2D3I: [TR_FER ] by SMART
    • Other resources with information on 2D3I
  • Community annotation for 2D3I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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