2D3N Hydrolase date Sep 29, 2005
title Crystal Structure Of Maltohexaose-Producing Amylase From Bac Sp.707 Complexed With Maltohexaose
authors R.Kanai, K.Haga, T.Akiba, K.Yamane, K.Harata
compound source
Molecule: Glucan 1,4-Alpha-Maltohexaosidase
Chain: A
Synonym: G6-Amylase, Maltohexaose-Producing Amylase, Exo- Maltohexaohydrolase;
Ec: 3.2.1.98
Engineered: Yes
Organism_scientific: Bacillus Sp.
Organism_taxid: 1416
Strain: 707
Expression_system: Bacillus Subtilis
Expression_system_taxid: 1423
Expression_system_strain: 207-25
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptub812
symmetry Space Group: P 21 21 21
R_factor 0.155 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.630 82.690 126.970 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CA, GLC, NA enzyme Hydrolase E.C.3.2.1.98 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRole of Trp140 at subsite -6 on the maltohexaose production of maltohexaose-producing amylase from alkalophilic Bacillus sp.707., Kanai R, Haga K, Akiba T, Yamane K, Harata K, Protein Sci. 2006 Mar;15(3):468-77. Epub 2006 Feb 1. PMID:16452622
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (2d3n.pdb1.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 2D3N
  • CSU: Contacts of Structural Units for 2D3N
  • Likely Quarternary Molecular Structure file(s) for 2D3N
  • Structure Factors (626 Kb)
  • Retrieve 2D3N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D3N from S2C, [Save to disk]
  • Re-refined 2d3n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2D3N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2D3N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2D3N, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d3n_A] [2d3n]
  • SWISS-PROT database: [P19571]
  • Domain organization of [AMT6_BACS7] by SWISSPFAM
  • Domain found in 2D3N: [Aamy ] by SMART
  • Other resources with information on 2D3N
  • Community annotation for 2D3N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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