2D3T	Lyase, Oxidoreductase Transferase	date	Oct 01, 2005
title	Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomon Form V
authors	D.Tsuchiya, N.Shimizu, M.Ishikawa, Y.Suzuki, K.Morikawa
compound		source
Molecule: Fatty Oxidation Complex Alpha Subunit Chain: A, B Ec: 4.2.1.17, 5.3.3.8, 1.1.1.35, 5.1.2.3 Engineered: Yes		Organism_scientific: Pseudomonas Fragi Organism_taxid: 296 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: 3-Ketoacyl-Coa Thiolase Chain: C, D Synonym: Fatty Oxidation Complex Beta Subunit, Beta-Ketothi Acetyl-Coa Acyltransferase; Ec: 2.3.1.16 Engineered: Yes		Organism_scientific: Pseudomonas Fragi Organism_taxid: 296 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.242 R_Free 0.295
crystal cell	length a length b length c angle alpha angle beta angle gamma 95.227 137.552 198.139 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.40 Å
ligand	ACO, NAD	enzyme	Lyase E.C.4.2.1.17 BRENDA
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	Ligand-Induced Domain Rearrangement of Fatty Acid beta-Oxidation Multienzyme Complex., Tsuchiya D, Shimizu N, Ishikawa M, Suzuki Y, Morikawa K, Structure. 2006 Feb;14(2):237-46. PMID:16472743

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (311 Kb) [Save to disk] Biological Unit Coordinates (2d3t.pdb1.gz) 306 Kb LPC: Ligand-Protein Contacts for 2D3T CSU: Contacts of Structural Units for 2D3T Likely Quarternary Molecular Structure file(s) for 2D3T Structure Factors (321 Kb) Retrieve 2D3T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2D3T from S2C, [Save to disk] Re-refined 2d3t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2D3T in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2D3T

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2D3T, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2d3t_A] [2d3t] [2d3t_C] [2d3t_B] [2d3t_D] SWISS-PROT database: [P28790] [P28793] Domain organization of [FADA_PSEFR] [FADB_PSEFR] by SWISSPFAM

Other resources with information on 2D3T

Community annotation for 2D3T at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---