2D47 Dna date Oct 02, 1991
title Molecular Structure Of A Complete Turn Of A-Dna
authors N.Verdaguer, J.Aymami, D.Fernandez-Forner, I.Fita, M.Coll, T.Huyn J.Igolen, J.A.Subirana
compound source
Molecule: Dna (5'-D(Cpcpcpcpcpgpcpgpgpgpgpg)-3'
Chain: A, B
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 32 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.200 45.200 65.000 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand SPM enzyme
Primary referenceMolecular structure of a complete turn of A-DNA., Verdaguer N, Aymami J, Fernandez-Forner D, Fita I, Coll M, Huynh-Dinh T, Igolen J, Subirana JA, J Mol Biol 1991 Sep 20;221(2):623-35. PMID:1920437
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (2d47.pdb1.gz) 11 Kb
  • LPC: Ligand-Protein Contacts for 2D47
  • CSU: Contacts of Structural Units for 2D47
  • Likely Quarternary Molecular Structure file(s) for 2D47
  • Retrieve 2D47 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D47 from S2C, [Save to disk]
    • View 2D47 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2D47
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2D47, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d47] [2d47_B] [2d47_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2D47
  • Community annotation for 2D47 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science