2D69	Lyase	date	Nov 10, 2005
title	Crystal Structure Of The Complex Of Sulfate Ion And Octameri Ribulose-1,5-Bisphosphate Carboxylaseoxygenase (Rubisco) F Pyrococcus Horikoshii Ot3 (Form-2 Crystal)
authors	E.Mizohata, C.Mishima, R.Akasaka, H.Uda, T.Terada, M.Shirouzu, S.Y Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Ribulose Bisphosphate Carboxylase Chain: A, B, D, E Synonym: Rubisco, Ribulose-1,5-Bisphosphate Carboxylaseoxy Ec: 4.1.1.39 Engineered: Yes		Organism_scientific: Pyrococcus Horikoshii Organism_taxid: 70601 Strain: Ot3 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: C 1 2 1	R_factor 0.180 R_Free 0.209
crystal cell	length a length b length c angle alpha angle beta angle gamma 172.591 148.774 108.452 90.00 126.49 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	SO4	enzyme	Lyase E.C.4.1.1.39 BRENDA
Gene Ontology	Chain Function Process Component A, D, E, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (281 Kb) [Save to disk] Biological Unit Coordinates (2d69.pdb1.gz) 544 Kb Biological Unit Coordinates (2d69.pdb2.gz) 139 Kb Biological Unit Coordinates (2d69.pdb3.gz) 140 Kb Biological Unit Coordinates (2d69.pdb4.gz) 138 Kb LPC: Ligand-Protein Contacts for 2D69 CSU: Contacts of Structural Units for 2D69 Likely Quarternary Molecular Structure file(s) for 2D69 Structure Factors (3077 Kb) Retrieve 2D69 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2D69 from S2C, [Save to disk] Re-refined 2d69 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2D69 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2D69

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2D69, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2d69_B] [2d69_A] [2d69_D] [2d69_E] [2d69] SWISS-PROT database: [O58677] Domain organization of [RBL_PYRHO] by SWISSPFAM

Other resources with information on 2D69

Community annotation for 2D69 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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