2D7L Gene Regulation, Dna Binding Protein date Nov 24, 2005
title Solution Structure Of The Hmg Box Domain From Human Wd Repea Box Dna Binding Protein 1
authors T.Tomizawa, T.Kigawa, K.Saito, S.Koshiba, M.Inoue, Y.O.Kamatari, S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Wd Repeat And Hmg-Box Dna Binding Protein 1
Chain: A
Fragment: Hmg Box Domain
Synonym: Acidic Nucleoplasmic Dna- Binding Protein 1, And-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wdhd1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050111-08
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (412 Kb) [Save to disk]
  • Biological Unit Coordinates (2d7l.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 2D7L
  • Original NMR restraints for 2D7L from PDB
  • Retrieve 2D7L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D7L from S2C, [Save to disk]
  • View 2D7L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2D7L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2D7L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d7l_A] [2d7l]
  • SWISS-PROT database: [O75717]
  • Domain organization of [WDHD1_HUMAN] by SWISSPFAM
  • Domain found in 2D7L: [HMG ] by SMART
  • Other resources with information on 2D7L
  • Community annotation for 2D7L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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