2D7V Structural Genomics, Unknown Function date Nov 30, 2005
title Structure Of Osmc-Like Protein Of Unknown Function Vca0330 F Cholerae O1 Biovar Eltor Str. N16961
authors T.A.Binkowski, C.Hatzos, S.Moy, F.Collart, A.Joachimiak, Midwest For Structural Genomics (Mcsg)
compound source
Molecule: Hypothetical Protein Vca0330
Chain: A, B
Engineered: Yes
 Organism_scientific: Vibrio Cholerae O1 Biovar Eltor
Organism_taxid: 243277
Strain: N16961
Gene: Vca0330
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: C 1 2 1
R_factor 0.199 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
148.507 40.023 56.231 90.00 108.89 90.00
method X-Ray Diffractionresolution 1.97 Å
ligand MSE enzyme
note 2D7V is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (2d7v.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 2D7V
  • CSU: Contacts of Structural Units for 2D7V
  • Likely Quarternary Molecular Structure file(s) for 2D7V
  • Structure Factors (214 Kb)
  • Retrieve 2D7V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D7V from S2C, [Save to disk]
  • Re-refined 2d7v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2D7V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2D7V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2D7V, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d7v_B] [2d7v_A] [2d7v]
  • SWISS-PROT database: [Q9KMK9]
  • Domain organization of [Q9KMK9_VIBCH] by SWISSPFAM
    • Other resources with information on 2D7V
  • Community annotation for 2D7V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science