2D8H Unknown Function date Dec 06, 2005
title Solution Structure Of The Sh3 Domain Of Hypothetical Protein
authors X.R.Qin, T.Nagasima, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Sh3yl1 Protein
Chain: A
Fragment: Sh3 Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sh3yl1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050425-18
Other_details: Cell Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (392 Kb) [Save to disk]
  • Biological Unit Coordinates (2d8h.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 2D8H
  • Original NMR restraints for 2D8H from PDB
  • Retrieve 2D8H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D8H from S2C, [Save to disk]
  • View 2D8H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2D8H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2D8H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d8h] [2d8h_A]
  • SWISS-PROT database: [Q96HL8]
  • Domain organization of [SH3Y1_HUMAN] by SWISSPFAM
  • Domain found in 2D8H: [SH3 ] by SMART
  • Other resources with information on 2D8H
  • Community annotation for 2D8H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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