2D9S Ligase date Dec 13, 2005
title Solution Structure Of Rsgi Ruh-049, A Uba Domain From Mouse
authors T.Hamada, H.Hirota, Y.J.Lin, P.Guntert, C.Kurosaki, K.Izumi, M.Yo S.Koshiba, T.Kigawa, S.Yokoyama, Riken Structural Genomicspro Initiative (Rsgi)
compound source
Molecule: Cbl E3 Ubiquitin Protein Ligase
Chain: A, B
Fragment: Uba Domain
Synonym: Signal Transduction Protein Cbl, Proto-Oncogene C- Casitas B-Lineage Lymphoma Proto- Oncogene;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Cbl
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P041108-06
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand
enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (523 Kb) [Save to disk]
  • Biological Unit Coordinates (2d9s.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 2D9S
  • Original NMR restraints for 2D9S from PDB
  • Retrieve 2D9S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D9S from S2C, [Save to disk]
  • View 2D9S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2D9S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2D9S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d9s] [2d9s_B] [2d9s_A]
  • SWISS-PROT database: [P22682]
  • Domain organization of [CBL_MOUSE] by SWISSPFAM
  • Domain found in 2D9S: [UBA ] by SMART
  • Other resources with information on 2D9S
  • Community annotation for 2D9S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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