2DA5 Dna Binding Protein date Dec 13, 2005
title Solution Structure Of The Second Homeobox Domain Of Zinc Fin Homeoboxes Protein 3 (Triple Homeobox 1 Protein)
authors S.Ohnishi, T.Kigawa, K.Saito, S.Koshiba, M.Inoue, S.Yokoyama, Rike Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Zinc Fingers And Homeoboxes Protein 3
Chain: A
Fragment: The Second Homeobox Domain
Synonym: Triple Homeobox 1 Protein
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zhx3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050404-23
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (396 Kb) [Save to disk]
  • Biological Unit Coordinates (2da5.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 2DA5
  • Retrieve 2DA5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DA5 from S2C, [Save to disk]
    • View 2DA5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DA5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DA5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2da5_A] [2da5]
  • SWISS-PROT database: [Q9H4I2]
  • Domain organization of [ZHX3_HUMAN] by SWISSPFAM
  • Domain found in 2DA5: [HOX ] by SMART
    • Other resources with information on 2DA5
  • Community annotation for 2DA5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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