2DB7 Transcription date Dec 15, 2005
title Crystal Structure Of Hypothetical Protein Ms0332
authors H.Wang, C.Takemoto-Hori, K.Murayama, T.Terada, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Hairyenhancer-Of-Split Related With Yrpw Motif 1;
Chain: A, B
Fragment: Hairy Protein
Synonym: Ms0332, Hairy And Enhancer Of Split Related-1, Hesr-1, Cardiovascular Helix-Loop-Helix Factor 2, Hes- Related Repressor Protein 2 Herp2;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Px041202-21
Other_details: Cell-Free Protein Synthesis
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.322 44.810 92.088 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (2db7.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 2DB7
  • CSU: Contacts of Structural Units for 2DB7
  • Likely Quarternary Molecular Structure file(s) for 2DB7
  • Structure Factors (79 Kb)
  • Retrieve 2DB7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DB7 from S2C, [Save to disk]
  • Re-refined 2db7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2DB7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DB7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DB7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2db7_B] [2db7] [2db7_A]
  • SWISS-PROT database: [Q9Y5J3]
  • Domain organization of [HEY1_HUMAN] by SWISSPFAM
  • Domain found in 2DB7: [ORANGE ] by SMART
    • Other resources with information on 2DB7
  • Community annotation for 2DB7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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