2DB9 Structural Genomics, Unknown Function date Dec 15, 2005
title Solution Structure Of The Plus-3 Domain Of Human Kiaa0252 Pr
authors M.Yoneyama, T.Kigawa, N.Tochio, N.Nameki, S.Koshiba, M.Inoue, S.Yo Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Paf1rna Polymerase II Complex Component
Chain: A
Fragment: Plus-3 Domain, Residues 8-143
Synonym: Kiaa0252 Protein
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rtf1
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050302-16
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (779 Kb) [Save to disk]
  • Biological Unit Coordinates (2db9.pdb1.gz) 38 Kb
  • CSU: Contacts of Structural Units for 2DB9
  • Retrieve 2DB9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DB9 from S2C, [Save to disk]
    • View 2DB9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DB9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DB9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2db9_A] [2db9]
  • SWISS-PROT database: [Q92541]
  • Domain organization of [RTF1_HUMAN] by SWISSPFAM
  • Domain found in 2DB9: [Plus3 ] by SMART
    • Other resources with information on 2DB9
  • Community annotation for 2DB9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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