2DCC Hydrolase date Jan 01, 2006
title X-Ray Crystal Structure Analysis Of Bovine Spleen Cathepsin Complex
authors D.Watanabe
compound source
Molecule: Cathepsin B
Chain: A
Ec: 3.4.22.1
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Tissue: Spleen
symmetry Space Group: P 43 21 2
R_factor 0.192 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.320 72.320 139.820 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.93 Å
ligand 77B, GOL, PO4 BindingDB enzyme Hydrolase E.C.3.4.22.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (2dcc.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 2DCC
  • CSU: Contacts of Structural Units for 2DCC
  • Likely Quarternary Molecular Structure file(s) for 2DCC
  • Structure Factors (330 Kb)
  • Retrieve 2DCC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DCC from S2C, [Save to disk]
  • Re-refined 2dcc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2DCC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DCC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DCC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dcc] [2dcc_A]
  • SWISS-PROT database: [P07688]
  • Domain organization of [CATB_BOVIN] by SWISSPFAM
  • Domain found in 2DCC: [Pept_C1 ] by SMART
  • Other resources with information on 2DCC
  • Community annotation for 2DCC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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