2DDH	Oxidoreductase	date	Jan 29, 2006
title	Crystal Structure Of Acyl-Coa Oxidase Complexed With 3-Oh-Do
authors	T.Keiji, Y.Nakajima, I.Miyahara, K.Hirotsu
compound		source
Molecule: Acyl-Coa Oxidase Chain: A Ec: 1.3.3.6 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11d
symmetry	Space Group: C 2 2 21	R_factor 0.199 R_Free 0.241
crystal cell	length a length b length c angle alpha angle beta angle gamma 85.500 103.200 161.900 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.07 Å
ligand	FAD, HXD	enzyme	Oxidoreductase E.C.1.3.3.6 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Three-Dimensional Structure of Rat-Liver Acyl-CoA Oxidase in Complex with a Fatty Acid: Insights into Substrate-Recognition and Reactivity toward Molecular Oxygen., Tokuoka K, Nakajima Y, Hirotsu K, Miyahara I, Nishina Y, Shiga K, Tamaoki H, Setoyama C, Tojo H, Miura R, J Biochem (Tokyo). 2006 Apr;139(4):789-795. PMID:16672280

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk] Biological Unit Coordinates (2ddh.pdb1.gz) 210 Kb LPC: Ligand-Protein Contacts for 2DDH CSU: Contacts of Structural Units for 2DDH Likely Quarternary Molecular Structure file(s) for 2DDH Structure Factors (286 Kb) Retrieve 2DDH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DDH from S2C, [Save to disk] Re-refined 2ddh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2DDH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2DDH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2DDH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ddh] [2ddh_A] SWISS-PROT database: [P07872] Domain organization of [ACOX1_RAT] by SWISSPFAM

Other resources with information on 2DDH

Community annotation for 2DDH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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