2DE4	Hydrolase	date	Feb 08, 2006
title	Crystal Structure Of Dszb C27s Mutant In Complex With Biphen Sulfinic Acid
authors	W.C.Lee, T.Ohshiro, T.Matsubara, Y.Izumi, M.Tanokura
compound		source
Molecule: Dibenzothiophene Desulfurization Enzyme B Chain: A, B Ec: 3.13.1.3 Engineered: Yes Mutation: Yes		Organism_scientific: Rhodococcus Sp. Organism_taxid: 54064 Strain: Igts8 Gene: Dszb Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.169 R_Free 0.199
crystal cell	length a length b length c angle alpha angle beta angle gamma 153.370 45.860 112.900 90.00 115.93 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	ACT, BPS	enzyme	Hydrolase E.C.3.13.1.3 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure and desulfurization mechanism of 2'-hydroxybiphenyl-2-sulfinic acid desulfinase., Lee WC, Ohshiro T, Matsubara T, Izumi Y, Tanokura M, J Biol Chem. 2006 Oct 27;281(43):32534-9. Epub 2006 Aug 4. PMID:16891315

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk] Biological Unit Coordinates (2de4.pdb1.gz) 60 Kb Biological Unit Coordinates (2de4.pdb2.gz) 61 Kb LPC: Ligand-Protein Contacts for 2DE4 CSU: Contacts of Structural Units for 2DE4 Likely Quarternary Molecular Structure file(s) for 2DE4 Structure Factors (495 Kb) Retrieve 2DE4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DE4 from S2C, [Save to disk] Re-refined 2de4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2DE4, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2de4] [2de4_A] [2de4_B] SWISS-PROT database: [P54997] Domain organization of [SOXB_RHOSG] by SWISSPFAM

Other resources with information on 2DE4

Community annotation for 2DE4 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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