2DEN Protein Binding date Feb 14, 2006
title Solution Structure Of The Ubiquitin-Associated Domain Of Hum Ubp And Its Complex With Ubiquitin
authors H.Y.Hu, D.H.Lin, Y.G.Chang
compound source
Molecule: Immunoglobulin G-Binding Protein G,Ubiquitin-Like 7;
Chain: A
Fragment: Uba Domain,Uba Domain
Synonym: Igg-Binding Protein G,Bone Marrow Stromal Cell Ubi Like Protein,Bmsc-Ubp,Ubiquitin-Like Protein Sb132;
Engineered: Yes
Mutation: Yes
Other_details: Hgb1-Uba Is A Chimeric Protein. The N-Termin Is For Ease Of Purification. The Gb1 Domain Is Used For Sol Enhancement. The Gb1 Domain Sequence Refers To The Protein Accession Code P06654.,Hgb1-Uba Is A Chimeric Protein. The Histag Is For Ease Of Purification. The Gb1 Domain Is Used Solubility Enhancement. The Gb1 Domain Sequence Refers To T With Accession Code P06654.;
Organism_scientific: Streptococcus Sp. Group G, Homo Sapien
Organism_common: Human
Organism_taxid: 1320, 9606
Gene: Spg, Ubl7, Bmscubp, Sb132
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Codonplus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phgb

Molecule: Polyubiquitin-B
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubb
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-3a
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the ubiquitin-associated domain of human BMSC-UbP and its complex with ubiquitin., Chang YG, Song AX, Gao YG, Shi YH, Lin XJ, Cao XT, Lin DH, Hu HY, Protein Sci. 2006 Jun;15(6):1248-59. PMID:16731964
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (368 Kb) [Save to disk]
  • Biological Unit Coordinates (2den.pdb1.gz) 37 Kb
  • CSU: Contacts of Structural Units for 2DEN
  • Original NMR restraints for 2DEN from PDB
  • Retrieve 2DEN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DEN from S2C, [Save to disk]
  • View 2DEN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DEN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DEN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2den] [2den_A] [2den_B]
  • SWISS-PROT database: [P62988] [Q96S82]
  • Domain organization of [UBIQ_HUMAN] [UBL7_HUMAN] by SWISSPFAM
  • Domains found in 2DEN: [UBA] [UBQ ] by SMART
  • Other resources with information on 2DEN
  • Community annotation for 2DEN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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