2DI3 Transcription date Mar 28, 2006
title Crystal Structure Of The Transcriptional Factor Cgl2915 From Corynebacterium Glutamicum
authors Y.G.Gao, M.Yao, I.Tanaka
compound source
Molecule: Bacterial Regulatory Proteins, Gntr Family
Chain: A, B
Synonym: Bacterium Transcriptional Factor, Fadr Homologue P
Engineered: Yes
Organism_scientific: Corynebacterium Glutamicum
Organism_taxid: 1718
Strain: Atcc 13032
Gene: Cgl2915
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plamid
Expression_system_plasmid: Pet-22b(+)
symmetry Space Group: C 2 2 21
R_factor 0.205 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.750 107.634 104.838 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and functional characterization of the LldR from Corynebacterium glutamicum: a transcriptional repressor involved in L-lactate and sugar utilization., Gao YG, Suzuki H, Itou H, Zhou Y, Tanaka Y, Wachi M, Watanabe N, Tanaka I, Yao M, Nucleic Acids Res. 2008 Dec;36(22):7110-23. Epub 2008 Nov 6. PMID:18988622
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (2di3.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 2DI3
  • CSU: Contacts of Structural Units for 2DI3
  • Likely Quarternary Molecular Structure file(s) for 2DI3
  • Structure Factors (286 Kb)
  • Retrieve 2DI3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DI3 from S2C, [Save to disk]
  • Re-refined 2di3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2DI3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DI3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DI3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2di3_B] [2di3_A] [2di3]
  • SWISS-PROT database: [Q8NLM6]
  • Domain organization of [Q8NLM6_CORGL] by SWISSPFAM
  • Domains found in 2DI3: [ANK] [FCD] [HTH_GNTR ] by SMART
  • Other resources with information on 2DI3
  • Community annotation for 2DI3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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