2DJ6	Lyase	date	Mar 31, 2006
title	Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin Synthase Pyrococcus Horikoshii Ot3
authors	B.Bagautdinov, N.Kunishima, Riken Structural Genomicsproteomi Initiative (Rsgi)
compound		source
Molecule: Hypothetical Protein Ph0634 Chain: A, B, C Synonym: 6-Pyruvoyl Tetrahydrobiopterin Synthase Ec: 4.2.3.12 Engineered: Yes		Organism_scientific: Pyrococcus Horikoshii Organism_taxid: 70601 Strain: Ot3 Gene: Ph0634 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: (De3)Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet 11a
symmetry	Space Group: P 21 21 21	R_factor 0.201 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 35.831 95.708 105.654 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand		enzyme	Lyase E.C.4.2.3.12 BRENDA
Gene Ontology	Chain Function Process Component A, C, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (2dj6.pdb1.gz) 58 Kb CSU: Contacts of Structural Units for 2DJ6 Likely Quarternary Molecular Structure file(s) for 2DJ6 Structure Factors (175 Kb) Retrieve 2DJ6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DJ6 from S2C, [Save to disk] Re-refined 2dj6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2DJ6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2DJ6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2DJ6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dj6_B] [2dj6_C] [2dj6_A] [2dj6] SWISS-PROT database: [O58368] Domain organization of [O58368_PYRHO] by SWISSPFAM

Other resources with information on 2DJ6

Community annotation for 2DJ6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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