2DJT Signaling Protein date Apr 05, 2006
title Solution Structures Of The Pdz Domain Of Human Unnamed Prote
authors M.Sato, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structura Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Unnamed Protein Product
Chain: A
Fragment: Pdz Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Col09385
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050829-16
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (499 Kb) [Save to disk]
  • Biological Unit Coordinates (2djt.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 2DJT
  • Original NMR restraints for 2DJT from PDB
  • Retrieve 2DJT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DJT from S2C, [Save to disk]
    • View 2DJT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DJT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DJT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2djt_A] [2djt]
  • SWISS-PROT database: [Q9H6Y5]
  • Domain organization of [MAGIX_HUMAN] by SWISSPFAM
  • Domain found in 2DJT: [PDZ ] by SMART
    • Other resources with information on 2DJT
  • Community annotation for 2DJT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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