2DJY	Ligase Signaling Protein	date	Apr 06, 2006
title	Solution Structure Of Smurf2 Ww3 Domain-Smad7 Py Peptide Com
authors	P.A.Chong, H Lin, J.L.Wrana, J.D.Forman-Kay
compound		source
Molecule: Smad Ubiquitination Regulatory Factor 2 Chain: A Fragment: Ww3 Domain Synonym: Ubiquitin--Protein Ligase Smurf2, Smad-Specific E3 Ligase 2, Hsmurf2; Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Smurf2 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p1
Molecule: Mothers Against Decapentaplegic Homolog 7 Chain: B Fragment: Py Motif Region Synonym: Smad 7, Mothers Against Dpp Homolog 7, Smad7, Hsma Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Smad7, Madh7, Madh8 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p1
method	Solution NMR
ligand		enzyme	Ligase E.C.6.3.2 BRENDA
Primary reference	An Expanded WW Domain Recognition Motif Revealed by the Interaction between Smad7 and the E3 Ubiquitin Ligase Smurf2., Chong PA, Lin H, Wrana JL, Forman-Kay JD, J Biol Chem. 2006 Jun 23;281(25):17069-75. Epub 2006 Apr 26. PMID:16641086

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (428 Kb) [Save to disk] Biological Unit Coordinates (2djy.pdb1.gz) 14 Kb CSU: Contacts of Structural Units for 2DJY Original NMR restraints for 2DJY from PDB Retrieve 2DJY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DJY from S2C, [Save to disk]

View 2DJY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2DJY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2DJY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2djy_B] [2djy] [2djy_A] SWISS-PROT database: [O15105] [Q9HAU4] Domain organization of [SMAD7_HUMAN] [SMUF2_HUMAN] by SWISSPFAM Domain found in 2DJY: [WW ] by SMART

Other resources with information on 2DJY

Community annotation for 2DJY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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