2DLH Hydrolase date Apr 18, 2006
title Solution Structure Of The Second Fn3 Domain Of Human Recepto Tyrosine-Protein Phosphatase Delta
authors K.Seimiya, F.Hayashi, M.Yoshida, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase Delta
Chain: A
Fragment: Fn3, Fibronectin Type-III
Synonym: Protein-Tyrosine Phosphatase Delta, R-Ptp-Delta
Ec: 3.1.3.48
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptprd
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050302-29
Other_details: Cell Free Protein Synthesis
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.1.3.48 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (603 Kb) [Save to disk]
  • Biological Unit Coordinates (2dlh.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 2DLH
  • Original NMR restraints for 2DLH from PDB
  • Retrieve 2DLH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DLH from S2C, [Save to disk]
    • View 2DLH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DLH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DLH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dlh] [2dlh_A]
  • SWISS-PROT database: [P23468]
  • Domain organization of [PTPRD_HUMAN] by SWISSPFAM
  • Domain found in 2DLH: [FN3 ] by SMART
    • Other resources with information on 2DLH
  • Community annotation for 2DLH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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