2DLM Cell Adhesion date Apr 20, 2006
title Solution Structure Of The First Sh3 Domain Of Human Vinexin
authors H.P.Zhang, K.Izumi, M.Yoshida, F.Hayashi, S.Yokoyama, Riken Struc Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Vinexin
Chain: A
Fragment: Sh3 Domain, Residues 8-62
Synonym: Sorbin And Sh3 Domain-Containing Protein 3, Sh3-Co Adapter Molecule 1, Scam-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Scam1
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050516-12
Other_details: Cell Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (345 Kb) [Save to disk]
  • Biological Unit Coordinates (2dlm.pdb1.gz) 17 Kb
  • CSU: Contacts of Structural Units for 2DLM
  • Retrieve 2DLM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DLM from S2C, [Save to disk]
  • View 2DLM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DLM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DLM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dlm] [2dlm_A]
  • SWISS-PROT database: [O60504]
  • Domain organization of [VINEX_HUMAN] by SWISSPFAM
  • Domain found in 2DLM: [SH3 ] by SMART
  • Other resources with information on 2DLM
  • Community annotation for 2DLM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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