OCA Atlas for 2DMT

2DMT

Dna Binding Protein

date

Apr 24, 2006

title

Solution Structure Of The Homeobox Domain Of Homeobox Protei Like 1

authors

S.Ohnishi, M.Yoneyama, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, R Structural Genomicsproteomics Initiative (Rsgi)

compound

source

Molecule: Homeobox Protein Barh-Like 1
Chain: A
Fragment: Homeobox Domain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Barx1
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050919-24
Other_details: Cell-Free Protein Synthesis

method

Solution NMR

Gene
Ontology

Chain	Function	Process	Component
A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (429 Kb) [Save to disk]

Biological Unit Coordinates (2dmt.pdb1.gz) 21 Kb

CSU: Contacts of Structural Units for 2DMT

Retrieve 2DMT in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2DMT from S2C, [Save to disk]

View 2DMT in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2DMT

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 2DMT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dmt_A] [2dmt]

SWISS-PROT database: [Q9HBU1]

Domain organization of [BARX1_HUMAN] by SWISSPFAM

Domain found in 2DMT: [HOX ] by SMART

Other resources with information on 2DMT

Community annotation for 2DMT at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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