2DO6 Ligase date Apr 27, 2006
title Solution Structure Of Rsgi Ruh-065, A Uba Domain From Human
authors T.Hamada, H.Hirota, Y.J.Lin, P.Guntert, M.Sato, S.Koshiba, T.Kiga S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: E3 Ubiquitin-Protein Ligase Cbl-B
Chain: A, B
Fragment: Uba Domain
Synonym: Signal Transduction Protein Cbl-B, Sh3-Binding Pro B, Casitas B-Lineage Lymphoma Proto-Oncogene B, Ring Finger 56, Rsgi Ruh-065;
Ec: 6.3.2.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cblb, Rnf56
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050620-17
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand
enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (513 Kb) [Save to disk]
  • Biological Unit Coordinates (2do6.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 2DO6
  • Original NMR restraints for 2DO6 from PDB
  • Retrieve 2DO6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DO6 from S2C, [Save to disk]
    • View 2DO6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DO6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DO6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2do6_A] [2do6] [2do6_B]
  • SWISS-PROT database: [Q13191]
  • Domain organization of [CBLB_HUMAN] by SWISSPFAM
  • Domain found in 2DO6: [UBA ] by SMART
    • Other resources with information on 2DO6
  • Community annotation for 2DO6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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