2DOO	Hydrolase	date	May 01, 2006
title	The Structure Of Imp-1 Complexed With The Detecting Reagent (Dansylc4sh) By A Fluorescent Probe
authors	H.Kurosaki, Y.Yamaguchi, H.Yasuzawa, W.Jin, Y.Yamagata, Y.Arakawa
compound		source
Molecule: Beta-Lactamase Imp-1 Chain: A, B Synonym: Beta-Lactamase, Type II, Penicillinase, Blaimp Ec: 3.5.2.6 Engineered: Yes		Organism_scientific: Serratia Marcescens Organism_taxid: 615 Gene: Blaimp-1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pet9a Expression_system_plasmid: Pet9a-D-Imp
symmetry	Space Group: P 21 21 21	R_factor 0.185 R_Free 0.225
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.517 88.416 115.064 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.43 Å
ligand	C4H, ZN	enzyme	Hydrolase E.C.3.5.2.6 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Probing, inhibition, and crystallographic characterization of metallo-beta-lactamase (IMP-1) with fluorescent agents containing dansyl and thiol groups., Kurosaki H, Yamaguchi Y, Yasuzawa H, Jin W, Yamagata Y, Arakawa Y, ChemMedChem. 2006 Sep;1(9):969-72. PMID:16937423

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk] Biological Unit Coordinates (2doo.pdb1.gz) 75 Kb LPC: Ligand-Protein Contacts for 2DOO CSU: Contacts of Structural Units for 2DOO Likely Quarternary Molecular Structure file(s) for 2DOO Retrieve 2DOO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DOO from S2C, [Save to disk]

View 2DOO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2DOO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2DOO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2doo] [2doo_B] [2doo_A] SWISS-PROT database: [P52699] Domain organization of [BLAB_SERMA] by SWISSPFAM Domain found in 2DOO: [Lactamase_B ] by SMART

Other resources with information on 2DOO

Community annotation for 2DOO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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